Detailed information

Hämmerle, M., Rymbekova, A., Gelabert, P., Sawyer, S., Cheronet, O., Bernardi, P., Calvignac-Spencer, S., Kuhlwilm, M., Guellil, M., & Pinhasi, R. (2024). Link between Monkeypox Virus Genomes from Museum Specimens and 1965 Zoo Outbreak. Emerging infectious diseases, 30(4), 815-817. https://doi.org/10.3201/eid3004.231546

Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., Cox, A. J., Gao, H., Kumar, A., Aguet, F., Christmas, M. J., Clawson, H., Haeussler, M., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., ... Farh, K. K-H. (2024). Identification of constrained sequence elements across 239 primate genomes. Nature, 625(7996), 735-742. https://doi.org/10.1038/s41586-023-06798-8

Huang, X., Rymbekova, A., Dolgova, O., Lao, O., & Kuhlwilm, M. (2024). Harnessing deep learning for population genetic inference. Nature Reviews. Genetics, 25(1), 61–78. https://doi.org/10.1038/s41576-023-00636-3

Pawar, H., Rymbekova, A., Cuadros-Espinoza, S., Huang, X., Manuel, M. D., Valk, T. V. D., Lobon, I., Alvarez-Estape, M., Haber, M., Dolgova, O., Han, S., Esteller-Cucala, P., Juan, D., Ayub, Q., Garcia, R. B., Kelley, J., Cornejo, O. E., Lao, O., Andrés, A. M., ... Kuhlwilm, M. (2023). Ghost admixture in eastern gorillas. Nature Ecology & Evolution, 7(9), 1503-1514. https://doi.org/10.1038/s41559-023-02145-2

Kuderna, L. F. K., Gao, H., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., Vries, D. D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., ... Bonet, T. M. (2023). A global catalog of whole-genome diversity from 233 primate species. Science, 380(6648), 906-913. https://doi.org/10.1126/science.abn7829

Sørensen, E. F., Harris, R. A., Zhang, L., Raveendran, M., Kuderna, L. F. K., Walker, J. A., Storer, J. M., Kuhlwilm, M., Fontsere, C., Seshadri, L., Bergey, C. M., Burrell, A. S., Bergman, J., Phillips-Conroy, J. E., Shiferaw, F., Chiou, K. L., Chuma, I. S., Keyyu, J. D., Fischer, J., ... Rogers, J. (2023). Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons. Science, 380(6648), [eabn8153]. https://doi.org/10.1126/science.abn8153

Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A. N., Field, Y., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R., Balick, D., ... Rossi, R. V. (2023). The landscape of tolerated genetic variation in humans and primates. Science, 380(6648), [eabn8197]. https://doi.org/10.1126/science.abn8197

Bentley, B. P., carrasco, T., Ramos, E. K. D. S., Pawar, H., Arantes, L. S., Alexander, A., Banerjee, S., Masterson, P., Kuhlwilm, M., Pippel, M., Mountcastle, J., Haase, B., Uliano-Silva, M., Formenti, G., Howe, K., Chow, W., Tracey, A., Sims, Y., Pelan, S., ... Komoroske, L. M. (2023). Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences, 120(7), [e2201076120]. https://doi.org/10.1073/pnas.2201076120

Huang, X., Kruisz, P., & Kuhlwilm, M. (2022). sstar: A Python package for detecting archaic introgression from population genetic data with S*. Molecular Biology and Evolution, 39(11), [msac212]. https://doi.org/10.1101/2022.03.10.483765, https://doi.org/10.1093/molbev/msac212

Andirkó, A., Moriano, J., Vitriolo, A., Kuhlwilm, M., Testa, G., & Boeckx, C. (2022). Temporal mapping of derived high-frequency gene variants supports the mosaic nature of the evolution of Homo sapiens. Scientific Reports, 12(1), [9937]. https://doi.org/10.1038/s41598-022-13589-0

Fontsere, C., Kuhlwilm, M., Morcillo-Suarez, C., Alvarez-Estape, M., Lester, J. D., Gratton, P., Schmidt, J. M., Dieguez, P., Aebischer, T., Álvarez-Varona, P., Agbor, A., Angedakin, S., Assumang, A. K., Ayimisin, E. A., Bailey, E., Barubiyo, D., Bessone, M., Carretero-Alonso, A., Chancellor, R., ... Marques-Bonet, T. (2022). Population dynamics and genetic connectivity in recent chimpanzee history. Cell Genomics, 2(6), [100133]. https://doi.org/10.1016/j.xgen.2022.100133

Kuhlwilm, M., Fontsere, C., Frandsen, P., Hernandez-Rodriguez, J., Niemann, J., Scharff-Olsen, C. H., Vallet, D., Le Gouar, P., Ménard, N., Navarro, A., Siegismund, H. R., Hvilsom, C., Gilbert, M. T. P., Hughes, D., & Marquès-Bonet, T. (2021). The genetic impact of an Ebola outbreak on a wild gorilla population. BMC Genomics, 22(1), [735]. https://doi.org/10.1186/s12864-021-08025-y