Daniel Fernandes, BSc MSc PhD
Summer term 2020
300197 VU Introduction to R for Anthropologists
Teschler-Nicola, M., Fernandes, D., Händel, M., Einwögerer, T., Simon, U., Neugebauer-Maresch, C., Tangl, S., Heimel, P., Dobsak, T., Retzmann, A., Prohaska, T., Irrgeher, J., Kennett, D. J., Olalde, I., Reich, D., & Pinhasi, R. (2020). Ancient DNA reveals monozygotic newborn twins from the Upper Palaeolithic. Communications Biology, (3), [650]. https://doi.org/10.1038/s42003-020-01372-8
Sirak, K. A., Fernandes, D. M., Cheronet, O., Harney, E., Mah, M., Mallick, S., Rohland, N., Adamski, N., Broomandkhoshbacht, N., Callan, K., Candilio, F., Lawson, A. M., Mandl, K., Oppenheimer, J., Stewardson, K., Zalzala, F., Anders, A., Bartík, J., Coppa, A., ... Pinhasi, R. (2020). Human auditory ossicles as an alternative optimal source of ancient DNA. Genome Research, 30(3), 427-436. https://doi.org/10.1101/gr.260141.119
Fernandes, D. M., Mittnik, A., Olalde, I., Lazaridis, I., Cheronet, O., Rohland, N., Mallick, S., Bernardos, R., Broomandkhoshbacht, N., Carlsson, J., Culleton, B. J., Ferry, M., Gamarra, B., Lari, M., Mah, M., Michel, M., Modi, A., Novak, M., Oppenheimer, J., ... Reich, D. (2020). The spread of steppe and Iranian-related ancestry in the islands of the western Mediterranean. Nature Ecology & Evolution, 4, 334–345. https://doi.org/10.1038/s41559-020-1102-0
Fernandes, D., Sirak, K., Ringbauer, H., Sedig , J., Rohland, N., Cheronet, O., Mah, M., Mallick, S., Olalde, I., Culleton, B. J., Adamski, N., Bernardos, R., Bravo Morante, G., Broomandkhoshbacht, N., Callan, K., Candilio, F., Demetz, L., Duffett Carlson , K., Eccles , L., ... Reich, D. (2020). A genetic history of the pre-contact Caribbean. Nature. https://doi.org/10.1038/s41586-020-03053-2
Harney, É., Cheronet, O., Fernandes, D., Sirak, K., Rohland, N., Mah, M., Bernardos, R., Adamski, N., Broomandkhoshbacht, N., Callan, K., Lawson, A. M., Oppenheimer, J., Stewardson, K., Zalzala, F., Anders , A., Constantinescu , M., Coppa, A., Ciobanu , I., Dani, J., ... Pinhasi, R. (2020). A Minimally Destructive Protocol for DNA Extraction from Ancient Teeth. Manuscript submitted for publication.
Gelabert Xirinachs, P., Sawyer, S., Bergström, A., Collin, T. C., Meshveliani, T., Belfer-Cohen, A., Lordkipanidze, D., Jakeli, N., Matskevich, Z., Bar-Oz, G., Fernandes, D., Cheronet, O., Özdogan, K. T., Oberreiter, V., Feeney, R. N. M., Stahlschmidt, M. C., Skoglund, P., & Pinhasi, R. (2020). Genome-scale sequencing and analysis of human, wolf and bison DNA from 25,000 year-old sediment. Manuscript submitted for publication.
Hernando , I., Gamarra, B., McCall, A., Cheronet, O., Fernandes, D., Sirak, K., Schmidt, R., Lozano, M., Szeniczey, T., Hajdu, T., Bárány , A., Kalli , A., Tutkovics , EK., K, K., Kiss , K., Koós , J., Csengeri , P., Király , A., Horváth , A., ... Pinhasi, R. (2020). Integrating buccal and occlusal dental microwear with isotope analyses for a complete paleodietary reconstruction of Holocene Hungarian populations. Manuscript submitted for publication.
Ning , C., Fernandes, D., Changmai, P., Flegontova, O., Yüncü , E., Maier, R., Altınışık, N. E., Kassian , AS., Krause, J., Lalueza-Fox, C., Manic , A., Potter, B. A., Robbeets , M., Sirak, K., Siska, V., Vajda, E. J., Vyazov , LA., Wang, K., Wang, L., ... Flegontov, P. (2020). The genomic formation of First American ancestors in East and Northeast Asia. Manuscript submitted for publication.
Antonio, M. L., Gao, Z., Moots, H. M., Lucci, M., Candilio, F., Sawyer, S., Oberreiter, V., Calderon, D., Devitofranceschi, K., Aikens, R. C., Aneli, S., Bartoli, F., Bedini, A., Cheronet, O., Cotter, D. J., Fernandes, D. M., Gasperetti, G., Grifoni, R., Guidi, A., ... Pritchard, J. K. (2019). Ancient Rome: A genetic crossroads of Europe and the Mediterranean. Science, 366(6466), 708-714. https://doi.org/10.1126/science.aay6826
Cheronet, O., Fernandes, D., Olalde, I., Rohland, N., Soler, L., Cros, J-P., Large, J-M., Scarre, C., Joussaume, R., Reich, D., Laporte, L., & Pinhasi, R. (2019). aDNA and Kinship in French Atlantic Façade Megalithic Monuments. Poster session presented at Megaliths of the World, Les Lucs-sur-Boulogne, France.
Narasimhan, V. M., Patterson, N., Moorjani, P., Rohland, N., Bernardos, R., Mallick, S., Lazaridis, I., Nakatsuka, N., Olalde, I., Lipson, M., Kim, A. M., Olivieri, L. M., Coppa, A., Vidale, M., Mallory, J., Moiseyev, V., Kitov, E., Monge, J., Adamski, N., ... Reich, D. (2019). The formation of human populations in South and Central Asia. Science, 365(6457). https://doi.org/10.1126/science.aat7487
Gaudio, D., Fernandes, D. M., Schmidt, R., Cheronet, O., Mazzarelli, D., Mattia, M., O'Keeffe, T., Feeney, R. N. M., Cattaneo, C., & Pinhasi, R. (2019). Genome-Wide DNA from Degraded Petrous Bones and the Assessment of Sex and Probable Geographic Origins of Forensic Cases. Scientific Reports, 9, [8226]. https://doi.org/10.1038/s41598-019-44638-w
Stahlschmidt, M. C., Collin, T. C., Fernandes, D., Bar-Oz, G., Belfer-Cohen, A., Gao, Z., Jakeli, N., Matskevich, Z., Meshveliani, T., Pritschard, J. K., McDermott, F., & Pinhasi, R. (2019). Ancient Mammalian and Plant DNA from Late Quaternary Stalagmite Layers at Solkota Cave, Georgia. Scientific Reports, 9, [6628]. https://doi.org/10.1038/s41598-019-43147-0
Olalde, I., Mallick, S., Patterson, N., Rohland, N., Villalba-Mouco, V., Silva, M., Dulias, K., Edwards, C. J., Gandini, F., Pala, M., Soares, P., Ferrando-Bernal, M., Adamski, N., Broomandkhoshbacht, N., Cheronet, O., Culleton, B. J., Fernandes, D., Lawson, A. M., Mah, M., ... Reich, D. (2019). The genomic history of the Iberian Peninsula over the past 8000 years. Science, 363(6432), 1230-1234. https://doi.org/10.1126/science.aav4040
Pinhasi, R., Fernandes, D. M., Sirak, K., & Cheronet, O. (2019). Isolating the human cochlea to generate bone powder for ancient DNA analysis. Nature Protocols, 14, 1194–1205. https://doi.org/10.1038/s41596-019-0137-7
Fernandes, D., Sirak, K., Cheronet, O., Howcroft, R., Čavka, M., Los, D., Burmaz, J., Pinhasi, R., & Novak, M. (2019). Cranial deformation and genetic diversity in three adolescent male individuals from the Great Migration Period from Osijek, eastern Croatia. PLoS ONE, 14(8), [e0216366]. https://doi.org/10.1371/journal.pone.0216366
Lipson, M., Cheronet, O., Mallick, S., Rohland, N., Oxenham, M., Pietrusewsky, M., Pryce, T. O., Willis, A., Matsumura, H., Buckley, H., Domett, K., Nguyen, G. H., Trinh, H. H., Kyaw, A. A., Win, T. T., Pradier, B., Broomandkhoshbacht, N., Candilio, F., Changmai, P., ... Reich, D. (2018). Ancient genomes document multiple waves of migration in Southeast Asian prehistory. Science, 361(6397), 92-95. https://doi.org/10.1126/science.aat3188
Olalde, I., Brace, S., Allentoft, M. E., Armit, I., Kristiansen, K., Booth, T., Rohland, N., Mallick, S., Szécsényi-Nagy, A., Mittnik, A., Altena, E., Lipson, M., Lazaridis, I., Harper, T. K., Patterson, N., Broomandkhoshbacht, N., Diekmann, Y., Faltyskova, Z., Fernandes, D., ... Reich, D. (2018). The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190–196. https://doi.org/10.1038/nature25738
Mathieson, I., Alpaslan-Roodenberg, S., Posth, C., Szécsényi-Nagy, A., Rohland, N., Mallick, S., Olalde, I., Broomandkhoshbacht, N., Candilio, F., Cheronet, O., Fernandes, D., Ferry, M., Gamarra, B., Fortes, G. G., Haak, W., Harney, E., Jones, E., Keating, D., Krause-Kyora, B., ... Reich, D. (2018). The genomic history of southeastern Europe. Nature, 555(7695), 197–203. https://doi.org/10.1038/nature25778
Fernandes, D. M., Strapagiel, D., Borówka, P., Marciniak, B., Żądzińska, E., Sirak, K., Siska, V., Grygiel, R., Carlsson, J., Manica, A., Lorkiewicz, W., & Pinhasi, R. (2018). A genomic Neolithic time transect of hunter-farmer admixture in central Poland. Scientific Reports, 8(1), [14879]. https://doi.org/10.1038/s41598-018-33067-w
Steppe and Iranian ancestry among Bronze Age Central and Western Mediterranean populations
Daniel Fernandes (Speaker), David Reich (Speaker) & Ron Pinhasi (Speaker)
13 Dec 2018 → 14 Dec 2018
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Steppe and Iranian ancestry among Bronze Age Central and Western Mediterranean populations
Daniel Fernandes (Speaker), David Reich (Speaker) & Ron Pinhasi (Speaker)
13 Dec 2018 → 14 Dec 2018
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Department of Evolutionary Anthropology
Althanstraße 14 (UZA I)
1090 Wien
Room: 2.004